Pseudomonas syringae pv. tomato DC3000, PSPTO_0950 (ampD)

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_0950
NCBI Old Locus Tag	PSPTO0950
Name	ampD Synonym: PSPTO0950
Replicon	chromosome
Genomic location	1029038 - 1029586 (+ strand)

Cross-References

RefSeq	NP_790789.1
GI	28868170
Entrez	1182579
INSDC	AAO54484.1
NCBI Locus Tag	PSPTO_0950
NCBI Old Locus Tag	PSPTO0950
UniParc	UPI0000008618
UniProtKB Acc	Q888R6
UniProtKB ID	Q888R6_PSESM
UniRef100	UniRef100_Q888R6
UniRef50	UniRef50_Q47US2
UniRef90	UniRef90_S3MEL1

Product

Feature Type	CDS
Coding Frame	1
Product Name	N-acetyl-anhydromuranmyl-L-alanine amidase
Synonyms
Evidence for Translation
Charge (pH 7)	-10.75
Kyte-Doolittle Hydrophobicity Value	-0.301
Molecular Weight (kDa)	20.2
Isoelectric Point (pI)	4.48

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 249 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG004102 (487 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_0950 Search term: ampD Search term: N-acetyl-anhydromuranmyl-L-alanine amidase

Human Homologs

References