Pseudomonas syringae pv. tomato DC3000, PSPTO_1008

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_1008
NCBI Old Locus Tag	PSPTO1008
Name	Synonym: PSPTO1008
Replicon	chromosome
Genomic location	1100918 - 1102318 (+ strand)

Cross-References

RefSeq	NP_790846.1
GI	28868227
Entrez	1182642
INSDC	AAO54541.1
NCBI Locus Tag	PSPTO_1008
NCBI Old Locus Tag	PSPTO1008
UniParc	UPI0000008651
UniProtKB Acc	Q888L0
UniProtKB ID	Q888L0_PSESM
UniRef100	UniRef100_Q888L0
UniRef50	UniRef50_Q4K644
UniRef90	UniRef90_Q48N40

Product

Feature Type	CDS
Coding Frame	1
Product Name	methyl-accepting chemotaxis protein
Synonyms
Evidence for Translation
Charge (pH 7)	-2.63
Kyte-Doolittle Hydrophobicity Value	-0.164
Molecular Weight (kDa)	51.2
Isoelectric Point (pI)	6.28

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 410 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG015196 (176 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_1008 Search term: methyl-accepting chemotaxis protein

Human Homologs

References