Pseudomonas syringae pv. tomato DC3000, PSPTO_1025

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_1025
NCBI Old Locus Tag	PSPTO1025
Name	Synonym: PSPTO1025
Replicon	chromosome
Genomic location	1118505 - 1119704 (+ strand)

Cross-References

RefSeq	NP_790861.1
GI	28868242
Entrez	1182659
INSDC	AAO54556.1
NCBI Locus Tag	PSPTO_1025
NCBI Old Locus Tag	PSPTO1025
UniParc	UPI000000865C
UniProtKB Acc	Q888J9
UniProtKB ID	Q888J9_PSESM
UniRef100	UniRef100_Q888J9
UniRef50	UniRef50_Q4K4I3
UniRef90	UniRef90_S3NF82

Product

Feature Type	CDS
Coding Frame	1
Product Name	transglycosylase
Synonyms
Evidence for Translation
Charge (pH 7)	-3.37
Kyte-Doolittle Hydrophobicity Value	-0.111
Molecular Weight (kDa)	42.6
Isoelectric Point (pI)	5.48

Subcellular localization

Individual Mappings	Localization Confidence PMID Periplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 195 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001178 (486 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_1025 Search term: transglycosylase

Human Homologs

References