Pseudomonas syringae pv. tomato DC3000, PSPTO_1054

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_1054
NCBI Old Locus Tag	PSPTO1054
Name	Synonym: PSPTO1054
Replicon	chromosome
Genomic location	1151189 - 1152457 (- strand)

Cross-References

RefSeq	NP_790890.1
GI	28868271
Entrez	1182688
INSDC	AAO54585.1
NCBI Locus Tag	PSPTO_1054
NCBI Old Locus Tag	PSPTO1054
UniParc	UPI0000008679
UniProtKB Acc	Q888H0
UniProtKB ID	Q888H0_PSESM
UniRef100	UniRef100_A0A038GEN3
UniRef50	UniRef50_Q88JX6
UniRef90	UniRef90_S3MB16

Product

Feature Type	CDS
Coding Frame	1
Product Name	outer membrane porin, OprD family
Synonyms
Evidence for Translation
Charge (pH 7)	-0.80
Kyte-Doolittle Hydrophobicity Value	-0.443
Molecular Weight (kDa)	46.5
Isoelectric Point (pI)	6.70

Subcellular localization

Individual Mappings	Localization Confidence PMID Outer Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 16 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG017464 (45 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_1054 Search term: outer membrane porin, OprD family

Human Homologs

References