Pseudomonas syringae pv. tomato DC3000, PSPTO_1216

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_1216
NCBI Old Locus TagPSPTO1216
Name
Synonym: PSPTO1216
Replicon chromosome
Genomic location 1331262 - 1332209 (- strand)

Cross-References

RefSeq NP_791048.1
GI 28868429
Entrez 1182852
INSDC AAO54743.1
NCBI Locus Tag PSPTO_1216
NCBI Old Locus Tag PSPTO1216
UniParc UPI000000870F
UniProtKB Acc Q887S0
UniProtKB ID Q887S0_PSESM
UniRef100 UniRef100_Q887S0
UniRef50 UniRef50_Q887S0
UniRef90 UniRef90_Q887S0

Product

Feature Type CDS
Coding Frame 1
Product Name
LysR family transcriptional regulator
Synonyms
Evidence for Translation
Charge (pH 7) -3.96
Kyte-Doolittle Hydrophobicity Value 0.000
Molecular Weight (kDa) 34.5
Isoelectric Point (pI) 6.24

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown (This protein may have multiple localization sites) Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 471 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000157 (872 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_1216

Human Homologs

References

No references are associated with this feature.