Pseudomonas syringae pv. tomato DC3000, PSPTO_1217

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_1217
NCBI Old Locus Tag	PSPTO1217
Name	Synonym: PSPTO1217
Replicon	chromosome
Genomic location	1332394 - 1333890 (+ strand)

Cross-References

RefSeq	NP_791049.1
GI	28868430
Entrez	1182853
INSDC	AAO54744.1
NCBI Locus Tag	PSPTO_1217
NCBI Old Locus Tag	PSPTO1217
UniParc	UPI0000008710
UniProtKB Acc	Q887R9
UniProtKB ID	Q887R9_PSESM
UniRef100	UniRef100_Q887R9
UniRef50	UniRef50_P24126
UniRef90	UniRef90_Q887R9

Product

Feature Type	CDS
Coding Frame	1
Product Name	outer membrane efflux protein
Synonyms
Evidence for Translation
Charge (pH 7)	-1.93
Kyte-Doolittle Hydrophobicity Value	-0.112
Molecular Weight (kDa)	53.6
Isoelectric Point (pI)	6.71

Subcellular localization

Individual Mappings	Localization Confidence PMID Outer Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 286 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001777 (497 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_1217 Search term: outer membrane efflux protein

Human Homologs

References