Pseudomonas syringae pv. tomato DC3000, PSPTO_1266

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_1266
NCBI Old Locus Tag	PSPTO1266
Name	Synonym: PSPTO1266
Replicon	chromosome
Genomic location	1387607 - 1387888 (+ strand)

Cross-References

RefSeq	NP_791096.1
GI	28868477
Entrez	1182902
INSDC	AAO54791.1
NCBI Locus Tag	PSPTO_1266
NCBI Old Locus Tag	PSPTO1266
UniParc	UPI000000873C
UniProtKB Acc	Q887M5
UniProtKB ID	Q887M5_PSESM
UniRef100	UniRef100_A0A038GJH3
UniRef50	UniRef50_Q1I5F4
UniRef90	UniRef90_Q1I5F4

Product

Feature Type	CDS
Coding Frame	1
Product Name	HU family DNA-binding protein
Synonyms
Evidence for Translation
Charge (pH 7)	1.99
Kyte-Doolittle Hydrophobicity Value	-0.045
Molecular Weight (kDa)	9.8
Isoelectric Point (pI)	9.91

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 510 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001736 (503 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_1266 Search term: HU family DNA-binding protein

Human Homologs

References