Pseudomonas syringae pv. tomato DC3000, PSPTO_1296 (oprB)

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_1296
NCBI Old Locus Tag	PSPTO1296
Name	oprB Synonym: PSPTO1296
Replicon	chromosome
Genomic location	1426129 - 1427490 (+ strand)

Cross-References

RefSeq	NP_791125.1
GI	28868506
Entrez	1182932
INSDC	AAO54820.1
NCBI Locus Tag	PSPTO_1296
NCBI Old Locus Tag	PSPTO1296
UniParc	UPI0000008759
UniProtKB Acc	Q887J6
UniProtKB ID	Q887J6_PSESM
UniRef100	UniRef100_A0A038GEY2
UniRef50	UniRef50_Q51485
UniRef90	UniRef90_S3MTX6

Product

Feature Type	CDS
Coding Frame	1
Product Name	porin B
Synonyms
Evidence for Translation
Charge (pH 7)	-4.14
Kyte-Doolittle Hydrophobicity Value	-0.507
Molecular Weight (kDa)	50.3
Isoelectric Point (pI)	6.12

Subcellular localization

Individual Mappings	Localization Confidence PMID Outer Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 52 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG002430 (700 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_1296 Search term: oprB Search term: porin B

Human Homologs

References