Pseudomonas syringae pv. tomato DC3000, PSPTO_1523 (dapE)

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_1523
NCBI Old Locus Tag	PSPTO1523
Name	dapE Synonym: PSPTO1523
Replicon	chromosome
Genomic location	1678960 - 1680111 (- strand)

Cross-References

RefSeq	NP_791348.1
GI	28868729
Entrez	1183160
INSDC	AAO55043.1
NCBI Locus Tag	PSPTO_1523
NCBI Old Locus Tag	PSPTO1523
UniParc	UPI0000008834
UniProtKB Acc	Q886Q4
UniProtKB ID	DAPE_PSESM
UniRef100	UniRef100_Q886Q4
UniRef50	UniRef50_Q9KQ52
UniRef90	UniRef90_Q886Q4

Product

Feature Type	CDS
Coding Frame	1
Product Name	succinyl-diaminopimelate desuccinylase
Synonyms
Evidence for Translation
Charge (pH 7)	-14.77
Kyte-Doolittle Hydrophobicity Value	-0.092
Molecular Weight (kDa)	41.1
Isoelectric Point (pI)	4.99

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 493 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001121 (535 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_1523 Search term: dapE Search term: succinyl-diaminopimelate desuccinylase

Human Homologs

References