Pseudomonas syringae pv. tomato DC3000, PSPTO_1540 (dxr)

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_1540
NCBI Old Locus Tag	PSPTO1540
Name	dxr Synonym: PSPTO1540
Replicon	chromosome
Genomic location	1698441 - 1699631 (+ strand)

Cross-References

RefSeq	NP_791365.1
GI	28868746
Entrez	1183177
INSDC	AAO55060.1
NCBI Locus Tag	PSPTO_1540
NCBI Old Locus Tag	PSPTO1540
UniParc	UPI0000008845
UniProtKB Acc	Q886N7
UniProtKB ID	DXR_PSESM
UniRef100	UniRef100_Q886N7
UniRef50	UniRef50_A8GIE2
UniRef90	UniRef90_Q886N7

Product

Feature Type	CDS
Coding Frame	1
Product Name	1-deoxy-D-xylulose 5-phosphate reductoisomerase
Synonyms
Evidence for Translation
Charge (pH 7)	-12.24
Kyte-Doolittle Hydrophobicity Value	0.240
Molecular Weight (kDa)	42.2
Isoelectric Point (pI)	4.83

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 507 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG002024 (537 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_1540 Search term: dxr Search term: 1-deoxy-D-xylulose 5-phosphate reductoisomerase

Human Homologs

References