Pseudomonas syringae pv. tomato DC3000, PSPTO_1556 (ispD)

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_1556
NCBI Old Locus Tag	PSPTO1556
Name	ispD Synonym: PSPTO1556
Replicon	chromosome
Genomic location	1719132 - 1719842 (+ strand)

Cross-References

RefSeq	NP_791381.1
GI	28868762
Entrez	1183193
INSDC	AAO55076.1
NCBI Locus Tag	PSPTO_1556
NCBI Old Locus Tag	PSPTO1556
UniParc	UPI0000008855
UniProtKB Acc	Q886M1
UniProtKB ID	ISPD_PSESM
UniRef100	UniRef100_Q886M1
UniRef50	UniRef50_Q886M1
UniRef90	UniRef90_Q886M1

Product

Feature Type	CDS
Coding Frame	1
Product Name	4-diphosphocytidyl-2C-methyl-D-erythritol synthase
Synonyms
Evidence for Translation
Charge (pH 7)	-4.38
Kyte-Doolittle Hydrophobicity Value	-0.173
Molecular Weight (kDa)	26.0
Isoelectric Point (pI)	5.89

Subcellular localization

Individual Mappings	Localization Confidence PMID Unknown (This protein may have multiple localization sites) Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 522 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG002041 (535 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_1556 Search term: ispD Search term: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase

Human Homologs

References