Pseudomonas syringae pv. tomato DC3000, PSPTO_1561

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_1561
NCBI Old Locus Tag	PSPTO1561
Name	Synonym: PSPTO1561
Replicon	chromosome
Genomic location	1723431 - 1724489 (+ strand)

Cross-References

RefSeq	NP_791386.1
GI	28868767
Entrez	1183198
INSDC	AAO55081.1
NCBI Locus Tag	PSPTO_1561
NCBI Old Locus Tag	PSPTO1561
UniParc	UPI000000885A
UniProtKB Acc	Q886L6
UniProtKB ID	TRUD_PSESM
UniRef100	UniRef100_Q886L6
UniRef50	UniRef50_Q4KHE9
UniRef90	UniRef90_Q48F86

Product

Feature Type	CDS
Coding Frame	1
Product Name	hypothetical protein
Synonyms
Evidence for Translation
Charge (pH 7)	-0.64
Kyte-Doolittle Hydrophobicity Value	-0.281
Molecular Weight (kDa)	38.8
Isoelectric Point (pI)	6.80

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 202 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG002048 (536 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_1561

Human Homologs

References