Pseudomonas syringae pv. tomato DC3000, PSPTO_1787

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_1787
NCBI Old Locus TagPSPTO1787
Name
Synonym: PSPTO1787
Replicon chromosome
Genomic location 1957524 - 1958429 (+ strand)

Cross-References

RefSeq NP_791612.1
GI 28868993
Entrez 1183428
INSDC AAO55307.1
NCBI Locus Tag PSPTO_1787
NCBI Old Locus Tag PSPTO1787
UniParc UPI0000008939
UniProtKB Acc Q885P4
UniProtKB ID Q885P4_PSESM
UniRef100 UniRef100_Q885P4
UniRef50 UniRef50_B5WQG6
UniRef90 UniRef90_Q885P4

Product

Feature Type CDS
Coding Frame 1
Product Name
LysR family transcriptional regulator
Synonyms
Evidence for Translation
Charge (pH 7) -0.67
Kyte-Doolittle Hydrophobicity Value -0.219
Molecular Weight (kDa) 33.7
Isoelectric Point (pI) 6.79

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 475 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG017673 (47 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_1787

Human Homologs

References

No references are associated with this feature.