Pseudomonas syringae pv. tomato DC3000, PSPTO_2072

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_2072
NCBI Old Locus Tag	PSPTO2072
Name	Synonym: PSPTO2072
Replicon	chromosome
Genomic location	2249264 - 2249767 (- strand)

Cross-References

RefSeq	NP_791895.1
GI	28869276
Entrez	1183717
INSDC	AAO55590.1
NCBI Locus Tag	PSPTO_2072
NCBI Old Locus Tag	PSPTO2072
UniParc	UPI0000008A51
UniProtKB Acc	Q884L6
UniProtKB ID	Q884L6_PSESM
UniRef100	UniRef100_Q884L6
UniRef50	UniRef50_G0A8C3
UniRef90	UniRef90_Q884L6

Product

Feature Type	CDS
Coding Frame	1
Product Name	auxin-binding protein
Synonyms
Evidence for Translation
Charge (pH 7)	-5.62
Kyte-Doolittle Hydrophobicity Value	-0.436
Molecular Weight (kDa)	18.5
Isoelectric Point (pI)	5.27

Subcellular localization

Individual Mappings	Localization Confidence PMID Unknown Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 110 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG017747 (57 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_2072 Search term: auxin-binding protein

Human Homologs

References