Pseudomonas syringae pv. tomato DC3000, PSPTO_2089

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_2089
NCBI Old Locus Tag	PSPTO2089
Name	Synonym: PSPTO2089
Replicon	chromosome
Genomic location	2258114 - 2261395 (+ strand)

Cross-References

RefSeq	NP_791912.1
GI	28869293
Entrez	1183735
INSDC	AAO55607.1
NCBI Locus Tag	PSPTO_2089
NCBI Old Locus Tag	PSPTO2089
UniParc	UPI0000008A62
UniProtKB Acc	Q884J9
UniProtKB ID	Q884J9_PSESM
UniRef100	UniRef100_Q884J9
UniRef50	UniRef50_Q87XY3
UniRef90	UniRef90_Q87XY3

Product

Feature Type	CDS
Coding Frame	1
Product Name	host specificity protein J, internal deletion
Synonyms
Evidence for Translation
Charge (pH 7)	-31.26
Kyte-Doolittle Hydrophobicity Value	-0.162
Molecular Weight (kDa)	115.9
Isoelectric Point (pI)	4.46

Subcellular localization

Individual Mappings	Localization Confidence PMID Extracellular Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 53 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000624 (277 members)
Putative Inparalogs	2 predicted inparalogs host specificity protein J, internal deletion (PSPTO_4041) 90.6% identity host specificity protein J, internal deletion (PSPTO_4041) 90.6% identity

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_2089 Search term: host specificity protein J, internal deletion

Human Homologs

References