Pseudomonas syringae pv. tomato DC3000, PSPTO_2110 (lolD)

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_2110
NCBI Old Locus Tag	PSPTO2110
Name	lolD Synonym: PSPTO2110
Replicon	chromosome
Genomic location	2285367 - 2286050 (+ strand)

Cross-References

RefSeq	NP_791932.1
GI	28869313
Entrez	1183757
INSDC	AAO55627.1
NCBI Locus Tag	PSPTO_2110
NCBI Old Locus Tag	PSPTO2110
UniParc	UPI0000008A76
UniProtKB Acc	Q884I3
UniProtKB ID	LOLD_PSESM
UniRef100	UniRef100_Q884I3
UniRef50	UniRef50_Q48KI4
UniRef90	UniRef90_Q48KI4

Product

Feature Type	CDS
Coding Frame	1
Product Name	lipoprotein releasing system, ATP-binding protein LolD
Synonyms
Evidence for Translation
Charge (pH 7)	-0.14
Kyte-Doolittle Hydrophobicity Value	-0.081
Molecular Weight (kDa)	24.6
Isoelectric Point (pI)	6.96

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG002595 (534 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_2110 Search term: lolD Search term: lipoprotein releasing system, ATP-binding protein LolD

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000479985 ATP binding cassette subfamily B member 7 [Source:HGNC Symbol;Acc:HGNC:48] E-value: 7.9e-21 Percent Identity: 32.3
Ensembl 110, assembly GRCh38.p14	ENSP00000499543 ATP binding cassette subfamily B member 7 [Source:HGNC Symbol;Acc:HGNC:48] E-value: 7.9e-21 Percent Identity: 32.3
Ensembl 110, assembly GRCh38.p14	ENSP00000362492 ATP binding cassette subfamily B member 7 [Source:HGNC Symbol;Acc:HGNC:48] E-value: 7.9e-21 Percent Identity: 32.3
Ensembl 110, assembly GRCh38.p14	ENSP00000436586 ATP binding cassette subfamily B member 7 [Source:HGNC Symbol;Acc:HGNC:48] E-value: 7.9e-21 Percent Identity: 32.3
Ensembl 110, assembly GRCh38.p14	ENSP00000343849 ATP binding cassette subfamily B member 7 [Source:HGNC Symbol;Acc:HGNC:48] E-value: 7.9e-21 Percent Identity: 32.3
Ensembl 110, assembly GRCh38.p14	ENSP00000496526 ATP binding cassette subfamily B member 7 [Source:HGNC Symbol;Acc:HGNC:48] E-value: 7.9e-21 Percent Identity: 32.3
Ensembl 110, assembly GRCh38.p14	ENSP00000253577 ATP binding cassette subfamily B member 7 [Source:HGNC Symbol;Acc:HGNC:48] E-value: 7.9e-21 Percent Identity: 32.3

References