Pseudomonas syringae pv. tomato DC3000, PSPTO_2287 (prpB)

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_2287
NCBI Old Locus Tag	PSPTO2287
Name	prpB Synonym: PSPTO2287
Replicon	chromosome
Genomic location	2528345 - 2529238 (+ strand)

Cross-References

RefSeq	NP_792106.1
GI	28869487
Entrez	1183938
INSDC	AAO55801.1
NCBI Locus Tag	PSPTO_2287
NCBI Old Locus Tag	PSPTO2287
UniParc	UPI0000008B20
UniProtKB Acc	Q883R3
UniProtKB ID	Q883R3_PSESM
UniRef100	UniRef100_Q883R3
UniRef50	UniRef50_Q56062
UniRef90	UniRef90_Q883R3

Product

Feature Type	CDS
Coding Frame	1
Product Name	methylisocitrate lyase
Synonyms
Evidence for Translation
Charge (pH 7)	-6.12
Kyte-Doolittle Hydrophobicity Value	0.008
Molecular Weight (kDa)	32.0
Isoelectric Point (pI)	5.06

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 335 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000769 (537 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_2287 Search term: prpB Search term: methylisocitrate lyase

Human Homologs

References