Pseudomonas syringae pv. tomato DC3000, PSPTO_2978

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_2978
NCBI Old Locus Tag	PSPTO2978
Name	Synonym: PSPTO2978
Replicon	chromosome
Genomic location	3348163 - 3348912 (- strand)

Cross-References

RefSeq	NP_792775.1
GI	28870156
Entrez	1184633
INSDC	AAO56470.1
NCBI Locus Tag	PSPTO_2978
NCBI Old Locus Tag	PSPTO2978
UniParc	UPI0000008DA6
UniProtKB Acc	Q881B8
UniProtKB ID	Q881B8_PSESM
UniRef100	UniRef100_Q881B8
UniRef50	UniRef50_Q881B8
UniRef90	UniRef90_Q881B8

Product

Feature Type	CDS
Coding Frame	1
Product Name	chitin-binding protein
Synonyms
Evidence for Translation
Charge (pH 7)	-11.38
Kyte-Doolittle Hydrophobicity Value	-0.536
Molecular Weight (kDa)	28.0
Isoelectric Point (pI)	5.04

Subcellular localization

Individual Mappings	Localization Confidence PMID Extracellular Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 44 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG018139 (62 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_2978 Search term: chitin-binding protein

Human Homologs

References