Pseudomonas syringae pv. tomato DC3000, PSPTO_3078

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_3078
NCBI Old Locus TagPSPTO3078
Name
Synonym: PSPTO3078
Replicon chromosome
Genomic location 3461005 - 3461391 (+ strand)

Cross-References

RefSeq NP_792872.1
GI 28870253
Entrez 1184735
INSDC AAO56567.1
NCBI Locus Tag PSPTO_3078
NCBI Old Locus Tag PSPTO3078
UniParc UPI0000008E05
UniProtKB Acc Q880S3
UniProtKB ID Q880S3_PSESM
UniRef100 UniRef100_Q880S3
UniRef50 UniRef50_Q880S3
UniRef90 UniRef90_Q880S3

Product

Feature Type CDS
Coding Frame 1
Product Name
hypothetical protein
Synonyms
Evidence for Translation
Charge (pH 7) -3.54
Kyte-Doolittle Hydrophobicity Value -0.004
Molecular Weight (kDa) 14.0
Isoelectric Point (pI) 4.81

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 22 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG018184 (32 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_3078

Human Homologs

References

No references are associated with this feature.