Pseudomonas syringae pv. tomato DC3000, PSPTO_3079

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_3079
NCBI Old Locus Tag	PSPTO3079
Name	Synonym: PSPTO3079
Replicon	chromosome
Genomic location	3461451 - 3462107 (+ strand)

Cross-References

RefSeq	NP_792873.1
GI	28870254
Entrez	1184736
INSDC	AAO56568.1
NCBI Locus Tag	PSPTO_3079
NCBI Old Locus Tag	PSPTO3079
UniParc	UPI0000008E06
UniProtKB Acc	Q880S2
UniProtKB ID	Q880S2_PSESM
UniRef100	UniRef100_Q880S2
UniRef50	UniRef50_Q880S2
UniRef90	UniRef90_Q880S2

Product

Feature Type	CDS
Coding Frame	1
Product Name	hypothetical protein
Synonyms
Evidence for Translation
Charge (pH 7)	-4.31
Kyte-Doolittle Hydrophobicity Value	0.294
Molecular Weight (kDa)	22.5
Isoelectric Point (pI)	5.08

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 233 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG018185 (26 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_3079

Human Homologs

References