Pseudomonas syringae pv. tomato DC3000, PSPTO_3355

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_3355
NCBI Old Locus Tag	PSPTO3355
Name	Synonym: PSPTO3355
Replicon	chromosome
Genomic location	3792176 - 3792445 (+ strand)

Cross-References

RefSeq	NP_793138.1
GI	28870519
Entrez	1185014
INSDC	AAO56833.1
NCBI Locus Tag	PSPTO_3355
NCBI Old Locus Tag	PSPTO3355
UniParc	UPI0000008F04
UniProtKB Acc	Q87ZR9
UniProtKB ID	Q87ZR9_PSESM
UniRef100	UniRef100_Q87ZR9
UniRef50	UniRef50_P0A970
UniRef90	UniRef90_Q87ZR9

Product

Feature Type	CDS
Coding Frame	1
Product Name	cold shock domain family protein
Synonyms
Evidence for Translation
Charge (pH 7)	2.42
Kyte-Doolittle Hydrophobicity Value	-0.446
Molecular Weight (kDa)	9.8
Isoelectric Point (pI)	8.95

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 496 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG002930 (535 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_3355 Search term: cold shock domain family protein

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000489735 lin-28 homolog B [Source:HGNC Symbol;Acc:HGNC:32207] E-value: 8.7e-08 Percent Identity: 38.2
Ensembl 110, assembly GRCh38.p14	ENSP00000490468 lin-28 homolog B [Source:HGNC Symbol;Acc:HGNC:32207] E-value: 8.7e-08 Percent Identity: 38.2
Ensembl 110, assembly GRCh38.p14	ENSP00000344401 lin-28 homolog B [Source:HGNC Symbol;Acc:HGNC:32207] E-value: 8.7e-08 Percent Identity: 38.2

References