Pseudomonas syringae pv. tomato DC3000, PSPTO_3469

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_3469
NCBI Old Locus Tag	PSPTO3469
Name	Synonym: PSPTO3469
Replicon	chromosome
Genomic location	3916142 - 3916711 (- strand)

Cross-References

RefSeq	NP_793249.1
GI	28870630
Entrez	1185134
INSDC	AAO56944.1
NCBI Locus Tag	PSPTO_3469
NCBI Old Locus Tag	PSPTO3469
UniParc	UPI0000008F71
UniProtKB Acc	Q87ZG0
UniProtKB ID	Q87ZG0_PSESM
UniRef100	UniRef100_Q87ZG0
UniRef50	UniRef50_Q87ZG0
UniRef90	UniRef90_Q87ZG0

Product

Feature Type	CDS
Coding Frame	1
Product Name	DNA-binding protein
Synonyms
Evidence for Translation
Charge (pH 7)	-2.86
Kyte-Doolittle Hydrophobicity Value	-0.254
Molecular Weight (kDa)	21.0
Isoelectric Point (pI)	6.03

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 234 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000594 (1255 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_3469 Search term: DNA-binding protein

Human Homologs

References