Pseudomonas syringae pv. tomato DC3000, PSPTO_3555 (glcD)

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_3555
NCBI Old Locus Tag	PSPTO3555
Name	glcD Synonym: PSPTO3555
Replicon	chromosome
Genomic location	4011746 - 4013245 (+ strand)

Cross-References

RefSeq	NP_793335.1
GI	28870716
Entrez	1185220
INSDC	AAO57030.1
NCBI Locus Tag	PSPTO_3555
NCBI Old Locus Tag	PSPTO3555
UniParc	UPI0000008FC6
UniProtKB Acc	Q87Z75
UniProtKB ID	Q87Z75_PSESM
UniRef100	UniRef100_Q87Z75
UniRef50	UniRef50_P0AEQ0
UniRef90	UniRef90_D7I1T5

Product

Feature Type	CDS
Coding Frame	1
Product Name	glycolate oxidase subunit GlcD
Synonyms
Evidence for Translation
Charge (pH 7)	-14.67
Kyte-Doolittle Hydrophobicity Value	0.075
Molecular Weight (kDa)	53.7
Isoelectric Point (pI)	5.22

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 548 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG004921 (478 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_3555 Search term: glcD Search term: glycolate oxidase subunit GlcD

Human Homologs

References