Pseudomonas syringae pv. tomato DC3000, PSPTO_3823

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_3823
NCBI Old Locus Tag	PSPTO3823
Name	Synonym: PSPTO3823
Replicon	chromosome
Genomic location	4332060 - 4332722 (- strand)

Cross-References

RefSeq	NP_793596.1
GI	28870977
Entrez	1185494
INSDC	AAO57291.1
NCBI Locus Tag	PSPTO_3823
NCBI Old Locus Tag	PSPTO3823
UniParc	UPI00000090C0
UniProtKB Acc	Q87YH5
UniProtKB ID	Q87YH5_PSESM
UniRef100	UniRef100_Q87YH5
UniRef50	UniRef50_B2JEC6
UniRef90	UniRef90_F3EC22

Product

Feature Type	CDS
Coding Frame	1
Product Name	membrane protein
Synonyms
Evidence for Translation
Charge (pH 7)	0.10
Kyte-Doolittle Hydrophobicity Value	0.965
Molecular Weight (kDa)	23.4
Isoelectric Point (pI)	7.12

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 51 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG018471 (92 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_3823 Search term: membrane protein

Human Homologs

References