Pseudomonas syringae pv. tomato DC3000, PSPTO_3850

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_3850
NCBI Old Locus Tag	PSPTO3850
Name	Synonym: PSPTO3850
Replicon	chromosome
Genomic location	4359569 - 4360420 (+ strand)

Cross-References

RefSeq	NP_793622.1
GI	28871003
Entrez	1185521
INSDC	AAO57317.1
NCBI Locus Tag	PSPTO_3850
NCBI Old Locus Tag	PSPTO3850
UniParc	UPI00000090DA
UniProtKB Acc	Q87YF0
UniProtKB ID	Q87YF0_PSESM
UniRef100	UniRef100_Q87YF0
UniRef50	UniRef50_Q87YF0
UniRef90	UniRef90_Q87YF0

Product

Feature Type	CDS
Coding Frame	1
Product Name	hypothetical protein
Synonyms
Evidence for Translation
Charge (pH 7)	-5.56
Kyte-Doolittle Hydrophobicity Value	-0.376
Molecular Weight (kDa)	32.7
Isoelectric Point (pI)	6.13

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 19 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG018473 (22 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_3850

Human Homologs

References