Pseudomonas syringae pv. tomato DC3000, PSPTO_3908

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_3908
NCBI Old Locus Tag	PSPTO3908
Name	Synonym: PSPTO3908
Replicon	chromosome
Genomic location	4423209 - 4423733 (- strand)

Cross-References

RefSeq	NP_793679.1
GI	28871060
Entrez	1185581
INSDC	AAO57374.1
NCBI Locus Tag	PSPTO_3908
NCBI Old Locus Tag	PSPTO3908
UniParc	UPI0000009113
UniProtKB Acc	Q87Y93
UniProtKB ID	Q87Y93_PSESM
UniRef100	UniRef100_Q87Y93
UniRef50	UniRef50_Q87Y93
UniRef90	UniRef90_Q87Y93

Product

Feature Type	CDS
Coding Frame	1
Product Name	hypothetical protein
Synonyms
Evidence for Translation
Charge (pH 7)	1.95
Kyte-Doolittle Hydrophobicity Value	0.002
Molecular Weight (kDa)	19.9
Isoelectric Point (pI)	8.81

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 11 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001251 (532 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_3908

Human Homologs

References