Pseudomonas syringae pv. tomato DC3000, PSPTO_3936

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_3936
NCBI Old Locus Tag	PSPTO3936
Name	Synonym: PSPTO3936
Replicon	chromosome
Genomic location	4447263 - 4448261 (- strand)

Cross-References

RefSeq	NP_793705.1
GI	28871086
Entrez	1185610
INSDC	AAO57400.1
NCBI Locus Tag	PSPTO_3936
NCBI Old Locus Tag	PSPTO3936
UniParc	UPI000000912D
UniProtKB Acc	Q87Y69
UniProtKB ID	Q87Y69_PSESM
UniRef100	UniRef100_Q87Y69
UniRef50	UniRef50_Q87Y69
UniRef90	UniRef90_Q87Y69

Product

Feature Type	CDS
Coding Frame	1
Product Name	tail fiber domain protein
Synonyms
Evidence for Translation
Charge (pH 7)	0.89
Kyte-Doolittle Hydrophobicity Value	0.044
Molecular Weight (kDa)	34.3
Isoelectric Point (pI)	7.98

Subcellular localization

Individual Mappings	Localization Confidence PMID Outer Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 3 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000626 (312 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_3936 Search term: tail fiber domain protein

Human Homologs

References