Pseudomonas syringae pv. tomato DC3000, PSPTO_3954

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_3954
NCBI Old Locus TagPSPTO3954
Name
Synonym: PSPTO3954
Replicon chromosome
Genomic location 4462639 - 4463202 (+ strand)

Cross-References

RefSeq NP_793720.1
GI 28871101
Entrez 1185629
INSDC AAO57415.1
NCBI Locus Tag PSPTO_3954
NCBI Old Locus Tag PSPTO3954
UniParc UPI000000913B
UniProtKB Acc Q87Y55
UniProtKB ID Q87Y55_PSESM
UniRef100 UniRef100_A0A038G9N0
UniRef50 UniRef50_S3NH03
UniRef90 UniRef90_S3NH03

Product

Feature Type CDS
Coding Frame 1
Product Name
hypothetical protein
Synonyms
Evidence for Translation
Charge (pH 7) -5.20
Kyte-Doolittle Hydrophobicity Value 0.005
Molecular Weight (kDa) 20.6
Isoelectric Point (pI) 4.94

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 63 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000972 (536 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_3954

Human Homologs

References

No references are associated with this feature.