Pseudomonas syringae pv. tomato DC3000, PSPTO_3987 (oprD)

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_3987
NCBI Old Locus Tag	PSPTO3987
Name	oprD Synonym: PSPTO3987
Replicon	chromosome
Genomic location	4492830 - 4494176 (+ strand)

Cross-References

RefSeq	NP_793751.1
GI	28871132
Entrez	1185663
INSDC	AAO57446.1
NCBI Locus Tag	PSPTO_3987
NCBI Old Locus Tag	PSPTO3987
UniParc	UPI0000009159
UniProtKB Acc	Q87Y25
UniProtKB ID	Q87Y25_PSESM
UniRef100	UniRef100_Q87Y25
UniRef50	UniRef50_P32722
UniRef90	UniRef90_Q87Y25

Product

Feature Type	CDS
Coding Frame	1
Product Name	porin D
Synonyms
Evidence for Translation
Charge (pH 7)	-11.56
Kyte-Doolittle Hydrophobicity Value	-0.399
Molecular Weight (kDa)	48.4
Isoelectric Point (pI)	4.74

Subcellular localization

Individual Mappings	Localization Confidence PMID Outer Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 15 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000187 (1579 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_3987 Search term: oprD Search term: porin D

Human Homologs

References