Pseudomonas syringae pv. tomato DC3000, PSPTO_3989

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_3989
NCBI Old Locus Tag	PSPTO3989
Name	Synonym: PSPTO3989
Replicon	chromosome
Genomic location	4496135 - 4497091 (+ strand)

Cross-References

RefSeq	NP_793753.1
GI	28871134
Entrez	1185665
INSDC	AAO57448.1
NCBI Locus Tag	PSPTO_3989
NCBI Old Locus Tag	PSPTO3989
UniParc	UPI000000915B
UniProtKB Acc	Q87Y23
UniProtKB ID	Q87Y23_PSESM
UniRef100	UniRef100_Q87Y23
UniRef50	UniRef50_Q88NK3
UniRef90	UniRef90_Q87Y23

Product

Feature Type	CDS
Coding Frame	1
Product Name	lipoprotein
Synonyms
Evidence for Translation
Charge (pH 7)	-12.16
Kyte-Doolittle Hydrophobicity Value	-0.481
Molecular Weight (kDa)	35.9
Isoelectric Point (pI)	5.15

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 2 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG000921 (529 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_3989 Search term: lipoprotein

Human Homologs

References