Pseudomonas syringae pv. tomato DC3000, PSPTO_4072

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_4072
NCBI Old Locus Tag	PSPTO4072
Name	Synonym: PSPTO4072
Replicon	chromosome
Genomic location	4577419 - 4577766 (- strand)

Cross-References

RefSeq	NP_793834.1
GI	28871215
Entrez	1185752
INSDC	AAO57529.1
NCBI Locus Tag	PSPTO_4072
NCBI Old Locus Tag	PSPTO4072
UniParc	UPI00000091A1
UniProtKB Acc	Q87XV3
UniProtKB ID	Q87XV3_PSESM
UniRef100	UniRef100_Q87XV3
UniRef50	UniRef50_Q87XV3
UniRef90	UniRef90_Q87XV3

Product

Feature Type	CDS
Coding Frame	1
Product Name	regulatory protein
Synonyms
Evidence for Translation
Charge (pH 7)	4.70
Kyte-Doolittle Hydrophobicity Value	-0.321
Molecular Weight (kDa)	12.2
Isoelectric Point (pI)	8.40

Subcellular localization

Individual Mappings	Localization Confidence PMID Unknown Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 53 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG018559 (33 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_4072 Search term: regulatory protein

Human Homologs

References