Pseudomonas syringae pv. tomato DC3000, PSPTO_4110

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_4110
NCBI Old Locus Tag	PSPTO4110
Name	Synonym: PSPTO4110
Replicon	chromosome
Genomic location	4633906 - 4635171 (+ strand)

Cross-References

RefSeq	NP_793871.1
GI	28871252
Entrez	1185790
INSDC	AAO57566.1
NCBI Locus Tag	PSPTO_4110
NCBI Old Locus Tag	PSPTO4110
UniParc	UPI00000091C6
UniProtKB Acc	Q87XR6
UniProtKB ID	Q87XR6_PSESM
UniRef100	UniRef100_Q87XR6
UniRef50	UniRef50_W9BPM1
UniRef90	UniRef90_F3EA06

Product

Feature Type	CDS
Coding Frame	1
Product Name	leucine/isoleucine/valine transporter permease subunit
Synonyms
Evidence for Translation
Charge (pH 7)	10.38
Kyte-Doolittle Hydrophobicity Value	0.807
Molecular Weight (kDa)	46.2
Isoelectric Point (pI)	9.86

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 420 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001034 (536 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_4110 Search term: leucine/isoleucine/valine transporter permease subunit

Human Homologs

References