Pseudomonas syringae pv. tomato DC3000, PSPTO_4138

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_4138
NCBI Old Locus Tag	PSPTO4138
Name	Synonym: PSPTO4138
Replicon	chromosome
Genomic location	4664824 - 4665534 (+ strand)

Cross-References

RefSeq	NP_793899.1
GI	28871280
Entrez	1185818
INSDC	AAO57594.1
NCBI Locus Tag	PSPTO_4138
NCBI Old Locus Tag	PSPTO4138
UniParc	UPI00000091E2
UniProtKB Acc	Q87XN8
UniProtKB ID	Q87XN8_PSESM
UniRef100	UniRef100_Q87XN8
UniRef50	UniRef50_P0AEU5
UniRef90	UniRef90_Q4KH89

Product

Feature Type	CDS
Coding Frame	1
Product Name	histidine/lysine/arginine/ornithine ABC transporter permease HisM
Synonyms
Evidence for Translation
Charge (pH 7)	5.58
Kyte-Doolittle Hydrophobicity Value	0.555
Molecular Weight (kDa)	26.7
Isoelectric Point (pI)	9.04

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 441 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG002652 (435 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_4138 Search term: histidine/lysine/arginine/ornithine ABC transporter permease HisM

Human Homologs

References