Pseudomonas syringae pv. tomato DC3000, PSPTO_4145 (capB)

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_4145
NCBI Old Locus Tag	PSPTO4145
Name	capB Synonym: PSPTO4145
Replicon	chromosome
Genomic location	4672279 - 4672488 (+ strand)

Cross-References

RefSeq	NP_793906.1
GI	28871287
Entrez	1185825
INSDC	AAO57601.1
NCBI Locus Tag	PSPTO_4145
NCBI Old Locus Tag	PSPTO4145
UniParc	UPI00000091E9
UniProtKB Acc	P0A105
UniProtKB ID	CAPB_PSESM
UniRef100	UniRef100_P0A105
UniRef50	UniRef50_P0A105
UniRef90	UniRef90_P0A105

Product

Feature Type	CDS
Coding Frame	1
Product Name	cold shock protein CapB
Synonyms
Evidence for Translation
Charge (pH 7)	0.22
Kyte-Doolittle Hydrophobicity Value	-0.517
Molecular Weight (kDa)	7.7
Isoelectric Point (pI)	7.55

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 498 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG015263 (205 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_4145 Search term: capB Search term: cold shock protein CapB

Human Homologs

References