Pseudomonas syringae pv. tomato DC3000, PSPTO_4213

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_4213
NCBI Old Locus TagPSPTO4213
Name
Synonym: PSPTO4213
Replicon chromosome
Genomic location 4746888 - 4747847 (+ strand)

Cross-References

RefSeq NP_793974.1
GI 28871355
Entrez 1185893
INSDC AAO57669.1
NCBI Locus Tag PSPTO_4213
NCBI Old Locus Tag PSPTO4213
UniParc UPI000000922C
UniProtKB Acc Q87XG5
UniProtKB ID CMOB_PSESM
UniRef100 UniRef100_Q87XG5
UniRef50 UniRef50_Q87XG5
UniRef90 UniRef90_Q87XG5

Product

Feature Type CDS
Coding Frame 1
Product Name
tRNA mo(5)U34 methyltransferase
Synonyms
Evidence for Translation
Charge (pH 7) -4.98
Kyte-Doolittle Hydrophobicity Value -0.228
Molecular Weight (kDa) 36.1
Isoelectric Point (pI) 6.04

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession Header Accession Date Compound Source Resolution Method Percent Identity
4P7C TRANSFERASE 03/26/14 Crystal structure of putative methyltransferase from Pseudomonas syringae pv. tomato Pseudomonas syringae pv. tomato 1.85 X-RAY DIFFRACTION 100.0

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 140 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG000748 (534 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_4213

Human Homologs

References

No references are associated with this feature.