Pseudomonas syringae pv. tomato DC3000, PSPTO_4292

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_4292
NCBI Old Locus TagPSPTO4292
Name
Synonym: PSPTO4292
Replicon chromosome
Genomic location 4835207 - 4836541 (+ strand)

Cross-References

RefSeq NP_794048.1
GI 28871429
Entrez 1185973
INSDC AAO57743.1
NCBI Locus Tag PSPTO_4292
NCBI Old Locus Tag PSPTO4292
UniParc UPI0000009271
UniProtKB Acc Q87X96
UniProtKB ID Q87X96_PSESM
UniRef100 UniRef100_Q87X96
UniRef50 UniRef50_P13632
UniRef90 UniRef90_D7I4G9

Product

Feature Type CDS
Coding Frame 1
Product Name
sigma-54 dependent transcriptional regulator/response regulator
Synonyms
Evidence for Translation
Charge (pH 7) -3.23
Kyte-Doolittle Hydrophobicity Value -0.201
Molecular Weight (kDa) 49.6
Isoelectric Point (pI) 6.52

Subcellular localization

Individual Mappings
Localization Confidence PMID
Cytoplasmic Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 626 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG005049 (532 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_4292

Human Homologs

References

No references are associated with this feature.