Pseudomonas syringae pv. tomato DC3000, PSPTO_4363 (sodB)

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_4363
NCBI Old Locus Tag	PSPTO4363
Name	sodB Synonym: PSPTO4363
Replicon	chromosome
Genomic location	4925003 - 4925584 (+ strand)

Cross-References

RefSeq	NP_794118.1
GI	28871499
Entrez	1186044
INSDC	AAO57813.1
NCBI Locus Tag	PSPTO_4363
NCBI Old Locus Tag	PSPTO4363
UniParc	UPI00000092B5
UniProtKB Acc	Q87X27
UniProtKB ID	Q87X27_PSESM
UniRef100	UniRef100_Q87X27
UniRef50	UniRef50_P09223
UniRef90	UniRef90_P09223

Product

Feature Type	CDS
Coding Frame	1
Product Name	superoxide dismutase, Fe
Synonyms
Evidence for Translation
Charge (pH 7)	-6.39
Kyte-Doolittle Hydrophobicity Value	-0.227
Molecular Weight (kDa)	21.4
Isoelectric Point (pI)	5.21

Subcellular localization

Individual Mappings	Localization Confidence PMID Periplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

PDB 3D Structures

Accession	Header	Accession Date	Compound	Source	Resolution	Method	Percent Identity
1DT0	OXIDOREDUCTASE	01/10/00	CLONING, SEQUENCE, AND CRYSTALLOGRAPHIC STRUCTURE OF RECOMBINANT IRON SUPEROXIDE DISMUTASE FROM PSEUDOMONAS OVALIS	Pseudomonas putida	2.1	X-RAY DIFFRACTION	91.6

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 530 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG003959 (531 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_4363 Search term: sodB Search term: superoxide dismutase, Fe

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000356022 superoxide dismutase 2 [Source:HGNC Symbol;Acc:HGNC:11180] E-value: 1.1e-42 Percent Identity: 46.0
Ensembl 110, assembly GRCh38.p14	ENSP00000446252 superoxide dismutase 2 [Source:HGNC Symbol;Acc:HGNC:11180] E-value: 1.1e-42 Percent Identity: 46.0

References