Pseudomonas syringae pv. tomato DC3000, PSPTO_4385

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_4385
NCBI Old Locus Tag	PSPTO4385
Name	Synonym: PSPTO4385
Replicon	chromosome
Genomic location	4946342 - 4948633 (+ strand)

Cross-References

RefSeq	NP_794140.1
GI	28871521
Entrez	1186066
INSDC	AAO57835.1
NCBI Locus Tag	PSPTO_4385
NCBI Old Locus Tag	PSPTO4385
UniParc	UPI00000092CB
UniProtKB Acc	Q87X05
UniProtKB ID	Q87X05_PSESM
UniRef100	UniRef100_Q87X05
UniRef50	UniRef50_G8Q3S5
UniRef90	UniRef90_Q87X05

Product

Feature Type	CDS
Coding Frame	1
Product Name	Rhs element Vgr protein
Synonyms
Evidence for Translation
Charge (pH 7)	-18.46
Kyte-Doolittle Hydrophobicity Value	-0.495
Molecular Weight (kDa)	84.7
Isoelectric Point (pI)	5.96

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 138 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG016662 (15 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_4385 Search term: Rhs element Vgr protein

Human Homologs

References