Pseudomonas syringae pv. tomato DC3000, PSPTO_4429 (trpS)

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_4429
NCBI Old Locus Tag	PSPTO4429
Name	trpS Synonym: PSPTO4429
Replicon	chromosome
Genomic location	4996395 - 4997744 (- strand)

Cross-References

RefSeq	NP_794183.1
GI	28871564
Entrez	1186110
INSDC	AAO57878.1
NCBI Locus Tag	PSPTO_4429
NCBI Old Locus Tag	PSPTO4429
UniParc	UPI00000092F4
UniProtKB Acc	Q87WW4
UniProtKB ID	SYW_PSESM
UniRef100	UniRef100_Q87WW4
UniRef50	UniRef50_Q9HVX6
UniRef90	UniRef90_Q87WW4

Product

Feature Type	CDS
Coding Frame	1
Product Name	tryptophanyl-tRNA synthetase
Synonyms
Evidence for Translation
Charge (pH 7)	-9.44
Kyte-Doolittle Hydrophobicity Value	-0.231
Molecular Weight (kDa)	49.6
Isoelectric Point (pI)	5.13

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 602 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG004028 (536 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_4429 Search term: trpS Search term: tryptophanyl-tRNA synthetase

Human Homologs

Ensembl 110, assembly GRCh38.p14

ENSP00000235521 tryptophanyl tRNA synthetase 2, mitochondrial [Source:HGNC Symbol;Acc:HGNC:12730] E-value: 2.1e-33 Percent Identity: 29.6

References