Pseudomonas syringae pv. tomato DC3000, PSPTO_4452

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_4452
NCBI Old Locus Tag	PSPTO4452
Name	Synonym: PSPTO4452
Replicon	chromosome
Genomic location	5016321 - 5017046 (+ strand)

Cross-References

RefSeq	NP_794206.1
GI	28871587
Entrez	1186133
INSDC	AAO57901.1
NCBI Locus Tag	PSPTO_4452
NCBI Old Locus Tag	PSPTO4452
UniParc	UPI000000930B
UniProtKB Acc	Q87WU1
UniProtKB ID	Q87WU1_PSESM
UniRef100	UniRef100_Q87WU1
UniRef50	UniRef50_P45073
UniRef90	UniRef90_A0A0B7D3U1

Product

Feature Type	CDS
Coding Frame	1
Product Name	ABC transporter ATP-binding protein
Synonyms
Evidence for Translation
Charge (pH 7)	-0.90
Kyte-Doolittle Hydrophobicity Value	-0.066
Molecular Weight (kDa)	26.5
Isoelectric Point (pI)	6.80

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG004050 (536 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_4452 Search term: ABC transporter ATP-binding protein

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000374312 ATP binding cassette subfamily A member 12 [Source:HGNC Symbol;Acc:HGNC:14637] E-value: 1.9e-20 Percent Identity: 30.1
Ensembl 110, assembly GRCh38.p14	ENSP00000272895 ATP binding cassette subfamily A member 12 [Source:HGNC Symbol;Acc:HGNC:14637] E-value: 1.9e-20 Percent Identity: 30.1

References