Pseudomonas syringae pv. tomato DC3000, PSPTO_4453 (rpoN)

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_4453
NCBI Old Locus Tag	PSPTO4453
Name	rpoN Synonym: PSPTO4453
Replicon	chromosome
Genomic location	5017229 - 5018722 (+ strand)

Cross-References

RefSeq	NP_794207.1
GI	28871588
Entrez	1186134
INSDC	AAO57902.1
NCBI Locus Tag	PSPTO_4453
NCBI Old Locus Tag	PSPTO4453
UniParc	UPI000000930C
UniProtKB Acc	Q87WU0
UniProtKB ID	Q87WU0_PSESM
UniRef100	UniRef100_A0A038GH98
UniRef50	UniRef50_P0A171
UniRef90	UniRef90_Q9FDD8

Product

Feature Type	CDS
Coding Frame	1
Product Name	RNA polymerase sigma-54 factor
Synonyms
Evidence for Translation
Charge (pH 7)	-29.36
Kyte-Doolittle Hydrophobicity Value	-0.540
Molecular Weight (kDa)	56.7
Isoelectric Point (pI)	4.42

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 396 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG004051 (536 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_4453 Search term: rpoN Search term: RNA polymerase sigma-54 factor

Human Homologs

References