Pseudomonas syringae pv. tomato DC3000, PSPTO_4656

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_4656
NCBI Old Locus Tag	PSPTO4656
Name	Synonym: PSPTO4656
Replicon	chromosome
Genomic location	5259642 - 5260925 (+ strand)

Cross-References

RefSeq	NP_794407.1
GI	28871788
Entrez	1186339
INSDC	AAO58102.1
NCBI Locus Tag	PSPTO_4656
NCBI Old Locus Tag	PSPTO4656
UniParc	UPI00000093CC
UniProtKB Acc	Q87W98
UniProtKB ID	Q87W98_PSESM
UniRef100	UniRef100_Q87W98
UniRef50	UniRef50_Q0EDQ2
UniRef90	UniRef90_Q0EDQ2

Product

Feature Type	CDS
Coding Frame	1
Product Name	membrane protein
Synonyms
Evidence for Translation
Charge (pH 7)	7.28
Kyte-Doolittle Hydrophobicity Value	0.835
Molecular Weight (kDa)	45.2
Isoelectric Point (pI)	9.16

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 364 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG004276 (528 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_4656 Search term: membrane protein

Human Homologs

References