Pseudomonas syringae pv. tomato DC3000, PSPTO_4662

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_4662
NCBI Old Locus Tag	PSPTO4662
Name	Synonym: PSPTO4662
Replicon	chromosome
Genomic location	5265421 - 5266338 (+ strand)

Cross-References

RefSeq	NP_794413.1
GI	28871794
Entrez	1186345
INSDC	AAO58108.1
NCBI Locus Tag	PSPTO_4662
NCBI Old Locus Tag	PSPTO4662
UniParc	UPI00000093D2
UniProtKB Acc	Q87W92
UniProtKB ID	Q87W92_PSESM
UniRef100	UniRef100_Q87W92
UniRef50	UniRef50_W6QR65
UniRef90	UniRef90_Q87W92

Product

Feature Type	CDS
Coding Frame	1
Product Name	histone deacetylase family protein
Synonyms
Evidence for Translation
Charge (pH 7)	-7.34
Kyte-Doolittle Hydrophobicity Value	-0.177
Molecular Weight (kDa)	34.1
Isoelectric Point (pI)	6.18

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 443 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG016858 (223 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_4662 Search term: histone deacetylase family protein

Human Homologs

References