Pseudomonas syringae pv. tomato DC3000, PSPTO_4713

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_4713
NCBI Old Locus Tag	PSPTO4713
Name	Synonym: PSPTO4713
Replicon	chromosome
Genomic location	5338911 - 5339549 (+ strand)

Cross-References

RefSeq	NP_794457.1
GI	28871838
Entrez	1186396
INSDC	AAO58152.1
NCBI Locus Tag	PSPTO_4713
NCBI Old Locus Tag	PSPTO4713
UniParc	UPI00000093FA
UniProtKB Acc	Q87W52
UniProtKB ID	Q87W52_PSESM
UniRef100	UniRef100_Q87W52
UniRef50	UniRef50_G0AEB5
UniRef90	UniRef90_Q87W52

Product

Feature Type	CDS
Coding Frame	1
Product Name	alanyl tRNA synthetase-related protein
Synonyms
Evidence for Translation
Charge (pH 7)	-2.68
Kyte-Doolittle Hydrophobicity Value	-0.168
Molecular Weight (kDa)	24.2
Isoelectric Point (pI)	6.25

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 278 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG015271 (25 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_4713 Search term: alanyl tRNA synthetase-related protein

Human Homologs

References