Pseudomonas syringae pv. tomato DC3000, PSPTO_4735 (hrpB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Feature Overview

Strain Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest
Locus Tag
PSPTO_4735
NCBI Old Locus TagPSPTO4735
Name
hrpB
Synonym: PSPTO4735
Replicon chromosome
Genomic location 5362728 - 5365250 (- strand)

Cross-References

RefSeq NP_794474.1
GI 28871855
Entrez 1186418
INSDC AAO58169.1
NCBI Locus Tag PSPTO_4735
NCBI Old Locus Tag PSPTO4735
UniParc UPI0000009404
UniProtKB Acc Q87W38
UniProtKB ID Q87W38_PSESM
UniRef100 UniRef100_Q87W38
UniRef50 UniRef50_W0WBZ7
UniRef90 UniRef90_W0WBZ7

Product

Feature Type CDS
Coding Frame 1
Product Name
ATP-dependent helicase HrpB
Synonyms
Evidence for Translation
Charge (pH 7) -0.51
Kyte-Doolittle Hydrophobicity Value -0.250
Molecular Weight (kDa) 93.0
Isoelectric Point (pI) 6.93

Subcellular localization

Individual Mappings
Localization Confidence PMID
Unknown Class 3
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 314 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group POG001718 (534 members)
Putative Inparalogs None Found

Interactions

STRING database Search for predicted protein-protein interactions using:
Search term: PSPTO_4735
Search term: hrpB

Human Homologs

Ensembl 110, assembly GRCh38.p14
DExH-box helicase 34 [Source:HGNC Symbol;Acc:HGNC:16719]
E-value: 6.6e-65
Percent Identity: 35.5

References

No references are associated with this feature.