Pseudomonas syringae pv. tomato DC3000, PSPTO_4775

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_4775
NCBI Old Locus Tag	PSPTO4775
Name	Synonym: PSPTO4775
Replicon	chromosome
Genomic location	5415268 - 5416608 (+ strand)

Cross-References

RefSeq	NP_794510.1
GI	28871891
Entrez	1186458
INSDC	AAO58205.1
NCBI Locus Tag	PSPTO_4775
NCBI Old Locus Tag	PSPTO4775
UniParc	UPI0000009422
UniProtKB Acc	Q87W08
UniProtKB ID	Q87W08_PSESM
UniRef100	UniRef100_Q87W08
UniRef50	UniRef50_W8WWX3
UniRef90	UniRef90_Q87W08

Product

Feature Type	CDS
Coding Frame	1
Product Name	GntR family transcriptional regulator/aminotransferase, class I
Synonyms
Evidence for Translation
Charge (pH 7)	6.88
Kyte-Doolittle Hydrophobicity Value	-0.129
Molecular Weight (kDa)	49.8
Isoelectric Point (pI)	8.38

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 607 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG004861 (467 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_4775 Search term: GntR family transcriptional regulator/aminotransferase, class I

Human Homologs

References