Pseudomonas syringae pv. tomato DC3000, PSPTO_4792
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Feature Overview
| Strain |
Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003)
GCF_000007805.1|latest |
| Locus Tag |
PSPTO_4792
|
| NCBI Old Locus Tag | PSPTO4792 |
| Name |
Synonym: PSPTO4792 |
| Replicon | chromosome |
| Genomic location | 5431547 - 5433007 (- strand) |
Cross-References
| RefSeq | NP_794527.1 |
| GI | 28871908 |
| Entrez | 1186475 |
| NCBI Locus Tag | PSPTO_4792 |
| NCBI Old Locus Tag | PSPTO4792 |
Product
| Feature Type | CDS |
| Coding Frame | 1 |
| Product Name |
ISPsy6, transposase
|
| Synonyms | |
| Evidence for Translation | |
| Charge (pH 7) | 11.84 |
| Kyte-Doolittle Hydrophobicity Value | -0.549 |
| Molecular Weight (kDa) | 55.7 |
| Isoelectric Point (pI) | 8.90 |
Subcellular localization
| Individual Mappings | |
| Additional evidence for subcellular localization |
AlphaFold 2 Protein Structure Predictions
Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.
Pathogen Association Analysis
| Results |
Common
Found in both pathogen and nonpathogenic strains
Hits to this gene were found in 147 genera
|
Orthologs/Comparative Genomics
| Pseudomonas Ortholog Database | View orthologs at Pseudomonas Ortholog Database |
| Pseudomonas Ortholog Group |
POG000670 (556 members) |
| Putative Inparalogs |
4 predicted inparalogs ISPsy6, transposase (PSPTO_2204) 100.0% identity ISPsy6, transposase (PSPTO_1439) 100.0% identity ISPsy6, transposase (PSPTO_1418) 100.0% identity ISPsy6, transposase (PSPTO_0968) 100.0% identity |
Interactions
| STRING database | Search for predicted protein-protein interactions using:
Search term: PSPTO_4792
Search term: ISPsy6, transposase
|
Human Homologs
References
No references are associated with this feature.