Pseudomonas syringae pv. tomato DC3000, PSPTO_4825

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_4825
NCBI Old Locus Tag	PSPTO4825
Name	Synonym: PSPTO4825
Replicon	chromosome
Genomic location	5463084 - 5464979 (- strand)

Cross-References

RefSeq	NP_794559.1
GI	28871940
Entrez	1186508
INSDC	AAO58254.1
NCBI Locus Tag	PSPTO_4825
NCBI Old Locus Tag	PSPTO4825
UniParc	UPI0000009452
UniProtKB Acc	Q87VW0
UniProtKB ID	Q87VW0_PSESM
UniRef100	UniRef100_Q87VW0
UniRef50	UniRef50_G8PXZ8
UniRef90	UniRef90_Q4ZN77

Product

Feature Type	CDS
Coding Frame	1
Product Name	penicillin-binding protein
Synonyms
Evidence for Translation
Charge (pH 7)	7.08
Kyte-Doolittle Hydrophobicity Value	-0.278
Molecular Weight (kDa)	70.1
Isoelectric Point (pI)	8.90

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 575 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG001680 (534 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_4825 Search term: penicillin-binding protein

Human Homologs

References