Pseudomonas syringae pv. tomato DC3000, PSPTO_4852

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_4852
NCBI Old Locus Tag	PSPTO4852
Name	Synonym: PSPTO4852
Replicon	chromosome
Genomic location	5497215 - 5498405 (+ strand)

Cross-References

RefSeq	NP_794586.1
GI	28871967
Entrez	1186535
INSDC	AAO58281.1
NCBI Locus Tag	PSPTO_4852
NCBI Old Locus Tag	PSPTO4852
UniParc	UPI000000946D
UniProtKB Acc	Q87VT3
UniProtKB ID	Q87VT3_PSESM
UniRef100	UniRef100_Q87VT3
UniRef50	UniRef50_I2BMB1
UniRef90	UniRef90_S3N2I0

Product

Feature Type	CDS
Coding Frame	1
Product Name	hypothetical protein
Synonyms
Evidence for Translation
Charge (pH 7)	-2.20
Kyte-Doolittle Hydrophobicity Value	0.032
Molecular Weight (kDa)	43.1
Isoelectric Point (pI)	6.65

Subcellular localization

Individual Mappings	Localization Confidence PMID Unknown Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 80 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG003904 (429 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_4852

Human Homologs

References