Pseudomonas syringae pv. tomato DC3000, PSPTO_4916

Gene Feature Overview

Strain	Pseudomonas syringae pv. tomato DC3000 (Buell et al., 2003) GCF_000007805.1|latest
Locus Tag	PSPTO_4916
NCBI Old Locus Tag	PSPTO4916
Name	Synonym: PSPTO4916
Replicon	chromosome
Genomic location	5564457 - 5565332 (- strand)

Cross-References

RefSeq	NP_794649.1
GI	28872030
Entrez	1186599
INSDC	AAO58344.1
NCBI Locus Tag	PSPTO_4916
NCBI Old Locus Tag	PSPTO4916
UniParc	UPI00000094AC
UniProtKB Acc	Q87VM0
UniProtKB ID	Q87VM0_PSESM
UniRef100	UniRef100_A0A038G602
UniRef50	UniRef50_G8Q4Y5
UniRef90	UniRef90_D7HTZ2

Product

Feature Type	CDS
Coding Frame	1
Product Name	high affinity branched-chain amino acid ABC transporter ATP-binding protein
Synonyms
Evidence for Translation
Charge (pH 7)	-1.20
Kyte-Doolittle Hydrophobicity Value	0.009
Molecular Weight (kDa)	32.4
Isoelectric Point (pI)	6.72

Subcellular localization

Individual Mappings	Localization Confidence PMID Cytoplasmic Membrane Class 3 20472543
Additional evidence for subcellular localization

AlphaFold 2 Protein Structure Predictions

Protein structure predictions using a neural network model developed by DeepMind. If a UniProtKB accession is associated with this protein, a search link will be provided below.

Look for predicted 3D structure in AlphaFold DB: Search

Pathogen Association Analysis

Results

Common Found in both pathogen and nonpathogenic strains Hits to this gene were found in 669 genera

Orthologs/Comparative Genomics

Pseudomonas Ortholog Database	View orthologs at Pseudomonas Ortholog Database
Pseudomonas Ortholog Group	POG004529 (504 members)
Putative Inparalogs	None Found

Interactions

STRING database

Search for predicted protein-protein interactions using: Search term: PSPTO_4916 Search term: high affinity branched-chain amino acid ABC transporter ATP-binding protein

Human Homologs

Ensembl 110, assembly GRCh38.p14	ENSP00000442634 ATP binding cassette subfamily A member 13 [Source:HGNC Symbol;Acc:HGNC:14638] E-value: 1.2e-13 Percent Identity: 27.1
Ensembl 110, assembly GRCh38.p14	ENSP00000396789 ATP binding cassette subfamily A member 13 [Source:HGNC Symbol;Acc:HGNC:14638] E-value: 1.2e-13 Percent Identity: 27.1
Ensembl 110, assembly GRCh38.p14	ENSP00000411096 ATP binding cassette subfamily A member 13 [Source:HGNC Symbol;Acc:HGNC:14638] E-value: 1.2e-13 Percent Identity: 27.1

References